Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.6■□□□□ 0.25
RPA3P35244 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 AC026396.1-201ENST00000419388 421 ntBASIC16.6■□□□□ 0.25
RPA3P35244 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 AC136632.2-201ENST00000512891 861 ntBASIC16.6■□□□□ 0.25
RPA3P35244 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 MIR4492-201ENST00000581627 80 ntBASIC16.6■□□□□ 0.25
RPA3P35244 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.6■□□□□ 0.25
RPA3P35244 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.6■□□□□ 0.25
RPA3P35244 PCGF3-213ENST00000620529 1899 ntBASIC16.6■□□□□ 0.25
RPA3P35244 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RPA3P35244 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.6■□□□□ 0.25
RPA3P35244 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.6■□□□□ 0.25
RPA3P35244 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
RPA3P35244 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RPA3P35244 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 AL356488.2-201ENST00000602755 427 ntBASIC16.59■□□□□ 0.25
RPA3P35244 LINC02228-204ENST00000642115 2962 ntBASIC16.59■□□□□ 0.25
RPA3P35244 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
RPA3P35244 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
RPA3P35244 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RPA3P35244 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
RPA3P35244 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.58■□□□□ 0.25
RPA3P35244 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.58■□□□□ 0.25
RPA3P35244 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.58■□□□□ 0.25
RPA3P35244 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
RPA3P35244 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RPA3P35244 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RPA3P35244 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.58■□□□□ 0.24
RPA3P35244 KRT18P27-201ENST00000427733 1299 ntBASIC16.58■□□□□ 0.24
RPA3P35244 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms