Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
COL5A1P20908 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 KRT8P37-201ENST00000451609 1420 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.45■□□□□ 0.06
COL5A1P20908 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 ACTBP11-201ENST00000436287 1126 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 TARDBPP1-201ENST00000442013 1203 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 GNRHR2-203ENST00000581100 1187 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.45■□□□□ 0.06
COL5A1P20908 MIR6869-201ENST00000619434 62 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.44■□□□□ 0.06
COL5A1P20908 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 AC020907.1-201ENST00000616460 1350 ntBASIC15.44■□□□□ 0.06
COL5A1P20908 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.44■□□□□ 0.06
COL5A1P20908 FTH1P14-201ENST00000482930 551 ntBASIC15.44■□□□□ 0.06
COL5A1P20908 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.44■□□□□ 0.06
COL5A1P20908 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.44■□□□□ 0.06
COL5A1P20908 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.44■□□□□ 0.06
COL5A1P20908 SLC25A47P1-201ENST00000531577 414 ntBASIC15.44■□□□□ 0.06
COL5A1P20908 TDH-203ENST00000531764 1110 ntBASIC15.44■□□□□ 0.06
COL5A1P20908 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.44■□□□□ 0.06
COL5A1P20908 AL049840.4-201ENST00000602422 811 ntBASIC15.44■□□□□ 0.06
COL5A1P20908 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
COL5A1P20908 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.44■□□□□ 0.06
COL5A1P20908 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.44■□□□□ 0.06
COL5A1P20908 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL5A1P20908 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.44■□□□□ 0.06
COL5A1P20908 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 AC004987.2-201ENST00000395959 1148 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 AL355864.2-201ENST00000447420 863 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 AC099548.2-209ENST00000480264 625 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
COL5A1P20908 DUX4L45-201ENST00000566406 1057 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
COL5A1P20908 AC092933.1-201ENST00000393644 945 ntBASIC15.43■□□□□ 0.06
COL5A1P20908 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.43■□□□□ 0.06
COL5A1P20908 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.43■□□□□ 0.06
COL5A1P20908 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.43■□□□□ 0.06
COL5A1P20908 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.43■□□□□ 0.06
COL5A1P20908 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms