Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A3P12111 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
COL6A3P12111 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 AL161670.2-201ENST00000557650 1227 ntBASIC16.67■□□□□ 0.26
COL6A3P12111 SAMD11P1-201ENST00000571429 661 ntBASIC16.67■□□□□ 0.26
COL6A3P12111 KLK11-210ENST00000600362 759 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A3P12111 AC018695.6-201ENST00000614011 534 ntBASIC16.67■□□□□ 0.26
COL6A3P12111 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A3P12111 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A3P12111 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
COL6A3P12111 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A3P12111 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC16.67■□□□□ 0.26
COL6A3P12111 AC103691.2-201ENST00000618824 433 ntBASIC16.67■□□□□ 0.26
COL6A3P12111 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.66■□□□□ 0.26
COL6A3P12111 AC006453.4-201ENST00000636949 1252 ntBASIC16.66■□□□□ 0.26
COL6A3P12111 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A3P12111 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 FRMD8P1-201ENST00000440433 1524 ntBASIC16.66■□□□□ 0.26
COL6A3P12111 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.66■□□□□ 0.26
COL6A3P12111 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.66■□□□□ 0.26
COL6A3P12111 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL6A3P12111 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL6A3P12111 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL6A3P12111 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 WIZP1-201ENST00000531444 2299 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A3P12111 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 SLC25A24-204ENST00000569674 2357 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 AL139010.1-201ENST00000454878 894 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 C2orf69P1-201ENST00000563532 1093 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 AC138894.2-201ENST00000602838 371 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 CNN2P10-201ENST00000443067 918 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 AC005730.2-201ENST00000564549 1184 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 RN7SL713P-201ENST00000582127 302 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL6A3P12111 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A3P12111 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A3P12111 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A3P12111 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL6A3P12111 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A3P12111 ECM1P1-201ENST00000604092 1279 ntBASIC16.65■□□□□ 0.26
COL6A3P12111 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A3P12111 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A3P12111 KRT8P49-201ENST00000604166 1432 ntBASIC16.64■□□□□ 0.25
COL6A3P12111 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A3P12111 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms