Protein–RNA interactions for Protein: O60810

PRAMEF4, PRAME family member 4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF4O60810 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
PRAMEF4O60810 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
PRAMEF4O60810 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PRAMEF4O60810 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.72■□□□□ 0.11
PRAMEF4O60810 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 AKAP8P1-201ENST00000434743 1349 ntBASIC15.72■□□□□ 0.11
PRAMEF4O60810 PMS2P7-201ENST00000506558 1336 ntBASIC15.72■□□□□ 0.11
PRAMEF4O60810 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 LINC01225-203ENST00000563550 1244 ntBASIC15.72■□□□□ 0.11
PRAMEF4O60810 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PRAMEF4O60810 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PRAMEF4O60810 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 MIR648-201ENST00000385046 94 ntBASIC15.71■□□□□ 0.11
PRAMEF4O60810 YBX2P1-201ENST00000394192 760 ntBASIC15.71■□□□□ 0.11
PRAMEF4O60810 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 C20orf181-201ENST00000623918 480 ntBASIC15.71■□□□□ 0.11
PRAMEF4O60810 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.71■□□□□ 0.11
PRAMEF4O60810 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PRAMEF4O60810 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PRAMEF4O60810 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.71■□□□□ 0.1
PRAMEF4O60810 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
PRAMEF4O60810 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PRAMEF4O60810 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 141.6 ms