Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 AL596325.1-201ENST00000563991 1082 ntBASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 CYP4F24P-201ENST00000586049 1580 ntBASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PAAF1Q9BRP4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 GAPDHP21-201ENST00000450301 1010 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 RN7SL692P-201ENST00000464677 288 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AL109936.8-201ENST00000641772 604 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 BTBD7P1-201ENST00000447253 1453 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AC090340.1-201ENST00000620778 4980 ntBASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.35■□□□□ 0.37
PAAF1Q9BRP4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 AL589987.1-201ENST00000453380 819 ntBASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 PCDHA12-202ENST00000613593 2588 ntBASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 AC063926.2-201ENST00000623766 1308 ntBASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.34■□□□□ 0.37
PAAF1Q9BRP4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms