Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AP001059.3-201ENST00000619053 235 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 Z92544.3-201ENST00000624747 417 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AC093214.1-201ENST00000511688 1107 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AL603832.2-201ENST00000566195 2125 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 AC026120.1-201ENST00000611536 926 ntBASIC16.66■□□□□ 0.26
SHROOM3Q8TF72 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 AL139400.1-201ENST00000366220 510 ntBASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 ACTG1P14-201ENST00000446382 1122 ntBASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 AC024267.1-201ENST00000582320 895 ntBASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SHROOM3Q8TF72 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SHROOM3Q8TF72 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 AC063926.2-201ENST00000623766 1308 ntBASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 AC142381.1-201ENST00000426099 345 ntBASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 FAM58DP-201ENST00000428076 619 ntBASIC16.64■□□□□ 0.25
SHROOM3Q8TF72 RN7SL589P-201ENST00000481268 310 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms