Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 AL353801.3-201ENST00000609898 542 ntBASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ZNF540Q8NDQ6 NSUN5P1-202ENST00000421140 1535 ntBASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 NSUN5P2-203ENST00000457352 1529 ntBASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.27■□□□□ 0.04
ZNF540Q8NDQ6 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
ZNF540Q8NDQ6 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms