Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 LINC01144-201ENST00000626198 1710 ntBASIC20.22■□□□□ 0.83
SYNE4Q8N205 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AC022210.1-201ENST00000449856 793 ntBASIC20.22■□□□□ 0.83
SYNE4Q8N205 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 MIR4321-201ENST00000592276 80 ntBASIC20.22■□□□□ 0.83
SYNE4Q8N205 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 MIR8072-201ENST00000614241 80 ntBASIC20.22■□□□□ 0.83
SYNE4Q8N205 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNE4Q8N205 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNE4Q8N205 FLJ38576-201ENST00000623820 2459 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 TPRX2P-201ENST00000535362 881 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 AC025048.3-201ENST00000590609 569 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 AC005702.4-201ENST00000618393 416 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 MIR6069-201ENST00000620069 79 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 AC011676.5-201ENST00000624864 2660 ntBASIC20.21■□□□□ 0.83
SYNE4Q8N205 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNE4Q8N205 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SYNE4Q8N205 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 ALOX12P2-203ENST00000570921 1945 ntBASIC20.2■□□□□ 0.82
SYNE4Q8N205 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 RN7SL837P-201ENST00000463010 287 ntBASIC20.2■□□□□ 0.82
SYNE4Q8N205 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 ELK1P1-201ENST00000485699 580 ntBASIC20.2■□□□□ 0.82
SYNE4Q8N205 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNE4Q8N205 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNE4Q8N205 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE4Q8N205 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE4Q8N205 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE4Q8N205 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SYNE4Q8N205 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE4Q8N205 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNE4Q8N205 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
SYNE4Q8N205 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms