Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 AC073439.1-201ENST00000624121 1774 ntBASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC65Q8IXS2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC65Q8IXS2 AC018695.7-201ENST00000624587 2492 ntBASIC18.21■□□□□ 0.5
CCDC65Q8IXS2 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC65Q8IXS2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AP000347.1-202ENST00000435868 847 ntBASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 PRYP6-201ENST00000514804 343 ntBASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 AKAP8P1-201ENST00000434743 1349 ntBASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC65Q8IXS2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AL355306.1-201ENST00000415580 579 ntBASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AL671277.1-201ENST00000429656 993 ntBASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 FAM86C2P-203ENST00000528684 1004 ntBASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 AC092902.6-201ENST00000641783 218 ntBASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC65Q8IXS2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.18■□□□□ 0.5
CCDC65Q8IXS2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms