Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AL365330.1-201ENST00000607459 531 ntBASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AL592424.1-201ENST00000563624 1536 ntBASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
CCDC60Q8IWA6 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AC009053.2-201ENST00000563701 2365 ntBASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 REXO1L8P-201ENST00000604378 1897 ntBASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AC009407.1-201ENST00000568958 598 ntBASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AC087499.5-201ENST00000452760 1342 ntBASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC60Q8IWA6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 FAM207CP-201ENST00000443486 507 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AL512361.1-201ENST00000554200 418 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 LINC02560-201ENST00000596379 459 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AC026979.3-201ENST00000607315 403 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AC008761.3-201ENST00000624803 892 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 AL136982.4-201ENST00000437689 1740 ntBASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC60Q8IWA6 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms