Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LDB1Q86U70 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.38■□□□□ 0.21
LDB1Q86U70 AP000347.1-202ENST00000435868 847 ntBASIC16.38■□□□□ 0.21
LDB1Q86U70 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.38■□□□□ 0.21
LDB1Q86U70 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.38■□□□□ 0.21
LDB1Q86U70 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.38■□□□□ 0.21
LDB1Q86U70 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.38■□□□□ 0.21
LDB1Q86U70 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LDB1Q86U70 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 AC007950.2-201ENST00000615045 2347 ntBASIC16.37■□□□□ 0.21
LDB1Q86U70 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
LDB1Q86U70 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 MIR574-201ENST00000385209 96 ntBASIC16.37■□□□□ 0.21
LDB1Q86U70 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.37■□□□□ 0.21
LDB1Q86U70 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.37■□□□□ 0.21
LDB1Q86U70 AL078644.1-201ENST00000609881 752 ntBASIC16.37■□□□□ 0.21
LDB1Q86U70 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB1Q86U70 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.37■□□□□ 0.21
LDB1Q86U70 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LDB1Q86U70 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB1Q86U70 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
LDB1Q86U70 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB1Q86U70 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.36■□□□□ 0.21
LDB1Q86U70 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
LDB1Q86U70 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
LDB1Q86U70 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
LDB1Q86U70 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LDB1Q86U70 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDB1Q86U70 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms