Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
KRT39Q6A163 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 AC018695.7-201ENST00000624587 2492 ntBASIC17.69■□□□□ 0.42
KRT39Q6A163 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 BX842568.4-201ENST00000421222 227 ntBASIC17.69■□□□□ 0.42
KRT39Q6A163 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 AC105233.2-201ENST00000523697 349 ntBASIC17.69■□□□□ 0.42
KRT39Q6A163 AF228730.5-201ENST00000530288 346 ntBASIC17.69■□□□□ 0.42
KRT39Q6A163 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
KRT39Q6A163 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.69■□□□□ 0.42
KRT39Q6A163 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.69■□□□□ 0.42
KRT39Q6A163 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
KRT39Q6A163 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
KRT39Q6A163 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.68■□□□□ 0.42
KRT39Q6A163 KRT8P48-201ENST00000515599 1220 ntBASIC17.68■□□□□ 0.42
KRT39Q6A163 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.68■□□□□ 0.42
KRT39Q6A163 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.68■□□□□ 0.42
KRT39Q6A163 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 AC027307.2-201ENST00000591252 911 ntBASIC17.68■□□□□ 0.42
KRT39Q6A163 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
KRT39Q6A163 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.68■□□□□ 0.42
KRT39Q6A163 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
KRT39Q6A163 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
KRT39Q6A163 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
KRT39Q6A163 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.67■□□□□ 0.42
KRT39Q6A163 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
KRT39Q6A163 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms