Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL28A1Q2UY09 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC092506.1-202ENST00000401022 528 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 KRT223P-202ENST00000449164 1292 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC009477.1-201ENST00000452936 217 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC027307.2-201ENST00000591252 911 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AL009183.1-201ENST00000603760 355 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC099568.2-201ENST00000609194 695 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 AC003101.2-201ENST00000612557 442 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 COX11-210ENST00000639671 696 ntBASIC15.77■□□□□ 0.12
COL28A1Q2UY09 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL28A1Q2UY09 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 HMGA1P7-201ENST00000406908 502 ntBASIC15.76■□□□□ 0.11
COL28A1Q2UY09 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 AC119751.2-201ENST00000504529 210 ntBASIC15.76■□□□□ 0.11
COL28A1Q2UY09 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 AC133552.6-201ENST00000613406 534 ntBASIC15.76■□□□□ 0.11
COL28A1Q2UY09 AC008267.7-201ENST00000624570 1194 ntBASIC15.76■□□□□ 0.11
COL28A1Q2UY09 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms