Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
XRCC1P18887 TUBB8P12-201ENST00000308911 1335 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 TUBB7P-202ENST00000428444 1305 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 TUBB8P7-204ENST00000567960 1332 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 AC131009.4-201ENST00000624048 1740 ntBASIC16.39■□□□□ 0.21
XRCC1P18887 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
XRCC1P18887 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 AC023824.1-201ENST00000562945 2975 ntBASIC16.38■□□□□ 0.21
XRCC1P18887 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.38■□□□□ 0.21
XRCC1P18887 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.38■□□□□ 0.21
XRCC1P18887 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.38■□□□□ 0.21
XRCC1P18887 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.38■□□□□ 0.21
XRCC1P18887 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.38■□□□□ 0.21
XRCC1P18887 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
XRCC1P18887 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
XRCC1P18887 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 AP000344.2-201ENST00000512987 629 ntBASIC16.38■□□□□ 0.21
XRCC1P18887 AL596442.2-201ENST00000610240 980 ntBASIC16.38■□□□□ 0.21
XRCC1P18887 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.38■□□□□ 0.21
XRCC1P18887 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.38■□□□□ 0.21
XRCC1P18887 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.38■□□□□ 0.21
XRCC1P18887 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.38■□□□□ 0.21
XRCC1P18887 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
XRCC1P18887 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.37■□□□□ 0.21
XRCC1P18887 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 CNN2P11-201ENST00000429351 262 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.37■□□□□ 0.21
XRCC1P18887 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.37■□□□□ 0.21
XRCC1P18887 FAM86C2P-203ENST00000528684 1004 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.37■□□□□ 0.21
XRCC1P18887 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 AL161645.1-201ENST00000622716 1255 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
XRCC1P18887 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 AL391256.1-201ENST00000443260 1855 ntBASIC16.37■□□□□ 0.21
XRCC1P18887 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.37■□□□□ 0.21
XRCC1P18887 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
XRCC1P18887 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
XRCC1P18887 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.36■□□□□ 0.21
XRCC1P18887 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms