Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 HAUS4P1-201ENST00000406739 1145 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 KRT16P4-201ENST00000453883 522 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 MIR3180-1-201ENST00000580374 94 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 MIR3180-3-201ENST00000584616 94 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC099336.1-202ENST00000602961 463 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC138035.3-201ENST00000622706 2791 ntBASIC16.3■□□□□ 0.2
SSU72Q9NP77 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 NUS1P2-201ENST00000417358 873 ntBASIC16.29■□□□□ 0.2
SSU72Q9NP77 AC132008.2-207ENST00000454517 770 ntBASIC16.29■□□□□ 0.2
SSU72Q9NP77 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.29■□□□□ 0.2
SSU72Q9NP77 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SSU72Q9NP77 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.28■□□□□ 0.2
SSU72Q9NP77 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SSU72Q9NP77 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms