Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 GZMB-202ENST00000382540 816 ntTSL 5 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 GOLGA2P4-201ENST00000441462 777 ntBASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 REXO1L8P-201ENST00000604378 1897 ntBASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 RNF216P1-203ENST00000404404 2427 ntBASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 OLR1-203ENST00000432556 950 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 FAM86HP-204ENST00000513466 959 ntBASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SHANK3Q9BYB0 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 AC134915.1-201ENST00000426461 574 ntBASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 AC026954.1-201ENST00000429771 1293 ntBASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC20.79■□□□□ 0.92
SHANK3Q9BYB0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 BRWD1P1-201ENST00000401091 371 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 RHOXF1P1-202ENST00000635473 501 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 AC007613.1-201ENST00000572811 2597 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 AL133373.2-201ENST00000623187 2828 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 AC007551.1-201ENST00000457394 519 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 POU5F1P6-201ENST00000466990 990 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 AC022137.2-201ENST00000503482 481 ntBASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms