Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM56Q9BRZ2 AC007326.2-201ENST00000624224 7579 ntBASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 AC091167.2-201ENST00000579581 588 ntBASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 AC008735.5-201ENST00000623544 497 ntBASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM56Q9BRZ2 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 GPAA1P2-202ENST00000606848 1787 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 IGHV3-65-201ENST00000523210 341 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AL356488.2-201ENST00000602755 427 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AL121912.1-201ENST00000603683 238 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AC008667.4-201ENST00000607370 168 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AL031008.1-201ENST00000619963 541 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM56Q9BRZ2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 AL513477.1-201ENST00000602865 2407 ntBASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM56Q9BRZ2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms