Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 INTS4P2-202ENST00000614726 2019 ntBASIC15.95■□□□□ 0.14
VPS13AQ96RL7 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 IMP3P2-201ENST00000489760 475 ntBASIC15.94■□□□□ 0.14
VPS13AQ96RL7 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
VPS13AQ96RL7 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC124283.3-201ENST00000570869 594 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 MIR4741-201ENST00000579822 90 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 SOCS2P1-201ENST00000417727 557 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AP006547.1-201ENST00000563435 692 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC026979.3-201ENST00000607315 403 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC005252.2-201ENST00000624630 1141 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 AC234644.1-201ENST00000406065 370 ntBASIC15.93■□□□□ 0.14
VPS13AQ96RL7 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS13AQ96RL7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 MTX1P1-201ENST00000440904 838 ntBASIC15.92■□□□□ 0.14
VPS13AQ96RL7 NDUFV2P1-201ENST00000596415 907 ntBASIC15.92■□□□□ 0.14
VPS13AQ96RL7 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.92■□□□□ 0.14
VPS13AQ96RL7 AL359711.2-201ENST00000563105 872 ntBASIC15.92■□□□□ 0.14
VPS13AQ96RL7 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms