Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC023274.1-201ENST00000418278 595 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC004832.2-201ENST00000426397 482 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC092865.5-201ENST00000545435 363 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 AC023141.13-201ENST00000604991 943 ntBASIC15.79■□□□□ 0.12
VMP1Q96GC9 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.79■□□□□ 0.12
VMP1Q96GC9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VMP1Q96GC9 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AC092384.3-202ENST00000564646 2873 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AL021920.2-201ENST00000624828 1351 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 BCAR1-209ENST00000546196 1340 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 KRT18P13-201ENST00000400056 1290 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 DNAJB3-201ENST00000446806 729 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AC107918.2-201ENST00000530817 355 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 REXO1L3P-201ENST00000622202 1288 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 AC004877.2-201ENST00000623941 599 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 AL365203.3-201ENST00000609742 2057 ntBASIC15.78■□□□□ 0.12
VMP1Q96GC9 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VMP1Q96GC9 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
VMP1Q96GC9 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 AL513480.1-201ENST00000451731 511 ntBASIC15.77■□□□□ 0.12
VMP1Q96GC9 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms