Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.68■□□□□ 0.58
ERCC4Q92889 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC4Q92889 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ERCC4Q92889 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.67■□□□□ 0.58
ERCC4Q92889 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 AC073621.1-201ENST00000392730 636 ntBASIC18.67■□□□□ 0.58
ERCC4Q92889 RPS15P9-201ENST00000494093 319 ntBASIC18.67■□□□□ 0.58
ERCC4Q92889 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 UNC93B7-201ENST00000509439 705 ntBASIC18.67■□□□□ 0.58
ERCC4Q92889 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.67■□□□□ 0.58
ERCC4Q92889 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 AC107918.4-202ENST00000641623 219 ntBASIC18.67■□□□□ 0.58
ERCC4Q92889 AF228730.7-201ENST00000641842 219 ntBASIC18.67■□□□□ 0.58
ERCC4Q92889 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC4Q92889 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC4Q92889 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC4Q92889 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 AC103702.1-201ENST00000548801 2630 ntBASIC18.66■□□□□ 0.58
ERCC4Q92889 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 SAPCD2P3-201ENST00000455031 850 ntBASIC18.66■□□□□ 0.58
ERCC4Q92889 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
ERCC4Q92889 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC4Q92889 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 HLA-DQB2-231ENST00000435145 2026 ntBASIC18.66■□□□□ 0.58
ERCC4Q92889 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC4Q92889 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
ERCC4Q92889 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.65■□□□□ 0.58
ERCC4Q92889 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.65■□□□□ 0.58
ERCC4Q92889 AC068418.2-201ENST00000577309 3703 ntBASIC18.65■□□□□ 0.58
ERCC4Q92889 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
ERCC4Q92889 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC4Q92889 KRT18P27-201ENST00000427733 1299 ntBASIC18.65■□□□□ 0.58
ERCC4Q92889 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
ERCC4Q92889 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC4Q92889 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC4Q92889 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms