Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 FDX1P1-201ENST00000449115 551 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AC122714.2-201ENST00000502787 707 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 UNC93B7-201ENST00000509439 705 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 STK19B-204ENST00000512515 211 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AL662844.1-201ENST00000546340 181 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 TNRC18P2-201ENST00000417666 2714 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AC009336.1-201ENST00000608941 1553 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 PRAL-201ENST00000624952 3286 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 AC006058.4-201ENST00000624016 1670 ntBASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ZNF540Q8NDQ6 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AL160237.2-201ENST00000556165 472 ntBASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AC138894.3-201ENST00000603787 634 ntBASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AC064862.7-201ENST00000604520 867 ntBASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AL732292.2-201ENST00000609649 430 ntBASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AL021920.2-201ENST00000624828 1351 ntBASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ZNF540Q8NDQ6 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 AC002310.6-201ENST00000624451 1377 ntBASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 IGHV3-47-201ENST00000425060 335 ntBASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 EMBP1-201ENST00000458200 901 ntBASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ZNF540Q8NDQ6 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms