Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC006449.6-201ENST00000612330 2296 ntBASIC16.81■□□□□ 0.28
RTL3Q8N8U3 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AC006538.3-201ENST00000612495 578 ntBASIC16.81■□□□□ 0.28
RTL3Q8N8U3 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RTL3Q8N8U3 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 KRT18P32-201ENST00000424695 1287 ntBASIC16.8■□□□□ 0.28
RTL3Q8N8U3 FAM58DP-201ENST00000428076 619 ntBASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AC023141.5-201ENST00000458585 616 ntBASIC16.8■□□□□ 0.28
RTL3Q8N8U3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
RTL3Q8N8U3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms