Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.03■□□□□ 0.64
SF3A1Q15459 AL773604.1-201ENST00000617417 272 ntBASIC19.03■□□□□ 0.64
SF3A1Q15459 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.03■□□□□ 0.64
SF3A1Q15459 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 AC007950.2-201ENST00000615045 2347 ntBASIC19.03■□□□□ 0.64
SF3A1Q15459 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 PCGF3-213ENST00000620529 1899 ntBASIC19.03■□□□□ 0.64
SF3A1Q15459 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SF3A1Q15459 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.03■□□□□ 0.64
SF3A1Q15459 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SF3A1Q15459 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.02■□□□□ 0.64
SF3A1Q15459 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
SF3A1Q15459 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.02■□□□□ 0.64
SF3A1Q15459 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.02■□□□□ 0.64
SF3A1Q15459 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 AL031284.1-201ENST00000419297 478 ntBASIC19.02■□□□□ 0.64
SF3A1Q15459 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.02■□□□□ 0.64
SF3A1Q15459 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
SF3A1Q15459 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.02■□□□□ 0.64
SF3A1Q15459 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.02■□□□□ 0.64
SF3A1Q15459 AL160237.2-201ENST00000556165 472 ntBASIC19.02■□□□□ 0.64
SF3A1Q15459 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.02■□□□□ 0.64
SF3A1Q15459 ACTL9-202ENST00000612068 1252 ntBASIC19.02■□□□□ 0.64
SF3A1Q15459 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.02■□□□□ 0.64
SF3A1Q15459 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SF3A1Q15459 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
SF3A1Q15459 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SF3A1Q15459 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC19.02■□□□□ 0.63
SF3A1Q15459 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.63
SF3A1Q15459 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.02■□□□□ 0.63
SF3A1Q15459 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.02■□□□□ 0.63
SF3A1Q15459 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.02■□□□□ 0.63
SF3A1Q15459 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SF3A1Q15459 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.01■□□□□ 0.63
SF3A1Q15459 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
SF3A1Q15459 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
SF3A1Q15459 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.01■□□□□ 0.63
SF3A1Q15459 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 AC006449.6-201ENST00000612330 2296 ntBASIC19.01■□□□□ 0.63
SF3A1Q15459 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.01■□□□□ 0.63
SF3A1Q15459 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.01■□□□□ 0.63
SF3A1Q15459 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 MRPL3P1-201ENST00000400109 1033 ntBASIC19.01■□□□□ 0.63
SF3A1Q15459 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.01■□□□□ 0.63
SF3A1Q15459 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.01■□□□□ 0.63
SF3A1Q15459 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SF3A1Q15459 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 LINC01144-201ENST00000626198 1710 ntBASIC19■□□□□ 0.63
SF3A1Q15459 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 AL139384.1-201ENST00000612143 3047 ntBASIC19■□□□□ 0.63
SF3A1Q15459 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms