Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
APOEP02649 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
APOEP02649 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
APOEP02649 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.24■□□□□ 0.35
APOEP02649 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.24■□□□□ 0.35
APOEP02649 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.24■□□□□ 0.35
APOEP02649 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.24■□□□□ 0.35
APOEP02649 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
APOEP02649 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
APOEP02649 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.23■□□□□ 0.35
APOEP02649 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 AC254562.1-201ENST00000417586 456 ntBASIC17.23■□□□□ 0.35
APOEP02649 AP000344.2-201ENST00000512987 629 ntBASIC17.23■□□□□ 0.35
APOEP02649 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.23■□□□□ 0.35
APOEP02649 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.23■□□□□ 0.35
APOEP02649 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
APOEP02649 AL512652.2-201ENST00000625156 1716 ntBASIC17.23■□□□□ 0.35
APOEP02649 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
APOEP02649 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
APOEP02649 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.23■□□□□ 0.35
APOEP02649 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC17.22■□□□□ 0.35
APOEP02649 DNAJB3-202ENST00000449667 1266 ntBASIC17.22■□□□□ 0.35
APOEP02649 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
APOEP02649 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
APOEP02649 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
APOEP02649 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.21■□□□□ 0.35
APOEP02649 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.21■□□□□ 0.35
APOEP02649 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
APOEP02649 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.21■□□□□ 0.35
APOEP02649 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
APOEP02649 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.21■□□□□ 0.35
APOEP02649 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.21■□□□□ 0.35
APOEP02649 AL596442.2-201ENST00000610240 980 ntBASIC17.21■□□□□ 0.35
APOEP02649 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms