Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.49□□□□□ -0.09
LMX1BO60663 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.49□□□□□ -0.09
LMX1BO60663 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 MIR4751-201ENST00000578027 74 ntBASIC14.49□□□□□ -0.09
LMX1BO60663 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LMX1BO60663 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LMX1BO60663 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
LMX1BO60663 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
LMX1BO60663 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
LMX1BO60663 YBX1P5-201ENST00000509441 847 ntBASIC14.48□□□□□ -0.09
LMX1BO60663 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.48□□□□□ -0.09
LMX1BO60663 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 KRT8P39-201ENST00000396270 1433 ntBASIC14.48□□□□□ -0.09
LMX1BO60663 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.48□□□□□ -0.09
LMX1BO60663 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LMX1BO60663 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LMX1BO60663 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 AC131009.4-201ENST00000624048 1740 ntBASIC14.47□□□□□ -0.09
LMX1BO60663 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
LMX1BO60663 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14.47□□□□□ -0.09
LMX1BO60663 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC14.47□□□□□ -0.09
LMX1BO60663 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LMX1BO60663 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
LMX1BO60663 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms