Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PCDH8P1-201ENST00000428983 2773 ntBASIC18.36■□□□□ 0.53
MSH4O15457 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH4O15457 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.35■□□□□ 0.53
MSH4O15457 AC107890.1-201ENST00000422478 521 ntBASIC18.35■□□□□ 0.53
MSH4O15457 AL353705.2-201ENST00000428243 662 ntBASIC18.35■□□□□ 0.53
MSH4O15457 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.35■□□□□ 0.53
MSH4O15457 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.35■□□□□ 0.53
MSH4O15457 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 AC140878.1-201ENST00000565277 250 ntBASIC18.35■□□□□ 0.53
MSH4O15457 AC105021.1-202ENST00000570572 669 ntBASIC18.35■□□□□ 0.53
MSH4O15457 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 AL390955.2-201ENST00000603032 514 ntBASIC18.35■□□□□ 0.53
MSH4O15457 AL355385.1-201ENST00000606123 409 ntBASIC18.35■□□□□ 0.53
MSH4O15457 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
MSH4O15457 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.35■□□□□ 0.53
MSH4O15457 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH4O15457 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH4O15457 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
MSH4O15457 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.34■□□□□ 0.53
MSH4O15457 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSH4O15457 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
MSH4O15457 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.34■□□□□ 0.53
MSH4O15457 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.34■□□□□ 0.53
MSH4O15457 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.34■□□□□ 0.53
MSH4O15457 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.34■□□□□ 0.53
MSH4O15457 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.34■□□□□ 0.53
MSH4O15457 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.34■□□□□ 0.53
MSH4O15457 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH4O15457 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.34■□□□□ 0.53
MSH4O15457 AC006449.6-201ENST00000612330 2296 ntBASIC18.34■□□□□ 0.53
MSH4O15457 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
MSH4O15457 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.34■□□□□ 0.53
MSH4O15457 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.33■□□□□ 0.53
MSH4O15457 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
MSH4O15457 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH4O15457 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH4O15457 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
MSH4O15457 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH4O15457 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
MSH4O15457 AL118508.1-201ENST00000613502 2345 ntBASIC18.33■□□□□ 0.53
MSH4O15457 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
MSH4O15457 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH4O15457 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.33■□□□□ 0.53
MSH4O15457 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
MSH4O15457 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms