Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 AL031731.1-201ENST00000642131 2094 ntBASIC12.07□□□□□ -0.48
SMKR1H3BMG3 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 NUS1P1-201ENST00000446295 882 ntBASIC12.07□□□□□ -0.48
SMKR1H3BMG3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 AL512652.2-201ENST00000625156 1716 ntBASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 SSR4P1-203ENST00000599569 2260 ntBASIC12.06□□□□□ -0.48
SMKR1H3BMG3 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 AC106881.1-201ENST00000605849 3329 ntBASIC12.06□□□□□ -0.48
SMKR1H3BMG3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
SMKR1H3BMG3 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms