Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 RN7SL560P-201ENST00000577943 264 ntBASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
ZC3H4Q9UPT8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AL355864.2-201ENST00000447420 863 ntBASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 RPL13AP20-201ENST00000459725 609 ntBASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AP001258.2-201ENST00000529891 490 ntBASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
ZC3H4Q9UPT8 AC138028.4-201ENST00000564984 1845 ntBASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AL589702.1-201ENST00000641229 1509 ntBASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 SLC25A1P3-201ENST00000395415 828 ntBASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AC013467.2-201ENST00000605472 835 ntBASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 AC091271.1-201ENST00000611877 1162 ntBASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ZC3H4Q9UPT8 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 MIR663B-201ENST00000408361 115 ntBASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ZC3H4Q9UPT8 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms