Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 CROCCP2-202ENST00000412962 2773 ntBASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF541Q9H0D2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF541Q9H0D2 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF541Q9H0D2 AC008764.6-201ENST00000595909 2069 ntBASIC19.39■□□□□ 0.7
ZNF541Q9H0D2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 TPO-206ENST00000382269 1155 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AZGP1P1-201ENST00000411909 902 ntBASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 SLC25A24P2-201ENST00000415059 510 ntBASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 FOS-206ENST00000555347 1280 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF541Q9H0D2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 MIR326-201ENST00000362220 95 ntBASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 SOCS2P1-201ENST00000417727 557 ntBASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 ENPP7P5-201ENST00000541031 1031 ntBASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 DUX4L45-201ENST00000566406 1057 ntBASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
ZNF541Q9H0D2 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF541Q9H0D2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms