Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 KRT8P49-201ENST00000604166 1432 ntBASIC14.12□□□□□ -0.15
COL12A1Q99715 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL12A1Q99715 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL12A1Q99715 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.12□□□□□ -0.15
COL12A1Q99715 AC245884.6-201ENST00000515672 1067 ntBASIC14.12□□□□□ -0.15
COL12A1Q99715 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.12□□□□□ -0.15
COL12A1Q99715 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.12□□□□□ -0.15
COL12A1Q99715 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.12□□□□□ -0.15
COL12A1Q99715 AC026979.3-201ENST00000607315 403 ntBASIC14.12□□□□□ -0.15
COL12A1Q99715 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.12□□□□□ -0.15
COL12A1Q99715 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL12A1Q99715 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL12A1Q99715 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL12A1Q99715 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 AC135050.7-201ENST00000624508 2218 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AC093525.9-201ENST00000624961 1746 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL12A1Q99715 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AL021920.2-201ENST00000624828 1351 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.11□□□□□ -0.15
COL12A1Q99715 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 FGFR3P5-201ENST00000564496 886 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 AL139011.1-202ENST00000642063 584 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
COL12A1Q99715 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL12A1Q99715 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 AC016700.1-201ENST00000429424 312 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 IQSEC3P1-201ENST00000538799 536 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.11□□□□□ -0.15
COL12A1Q99715 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.11□□□□□ -0.15
COL12A1Q99715 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.11□□□□□ -0.15
COL12A1Q99715 AL353726.2-201ENST00000623259 884 ntBASIC14.11□□□□□ -0.15
COL12A1Q99715 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL12A1Q99715 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 LINC02199-201ENST00000506655 2702 ntBASIC14.1□□□□□ -0.15
COL12A1Q99715 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.1□□□□□ -0.15
COL12A1Q99715 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.1□□□□□ -0.15
COL12A1Q99715 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.1□□□□□ -0.15
COL12A1Q99715 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
COL12A1Q99715 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
COL12A1Q99715 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 REXO1L8P-201ENST00000604378 1897 ntBASIC14.1□□□□□ -0.15
COL12A1Q99715 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL12A1Q99715 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
COL12A1Q99715 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL12A1Q99715 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.1□□□□□ -0.15
COL12A1Q99715 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms