Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AP001505.2-201ENST00000616815 443 ntBASIC15.97■□□□□ 0.15
VPS13AQ96RL7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VPS13AQ96RL7 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.96■□□□□ 0.15
VPS13AQ96RL7 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC093724.1-201ENST00000448659 1027 ntBASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 AL354751.1-201ENST00000412768 1863 ntBASIC15.96■□□□□ 0.15
VPS13AQ96RL7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.96■□□□□ 0.15
VPS13AQ96RL7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.96■□□□□ 0.14
VPS13AQ96RL7 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
VPS13AQ96RL7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS13AQ96RL7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.96■□□□□ 0.14
VPS13AQ96RL7 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VPS13AQ96RL7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC016694.1-201ENST00000434179 700 ntBASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 LINC01115-203ENST00000606068 577 ntBASIC15.95■□□□□ 0.14
VPS13AQ96RL7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 REXO1L8P-201ENST00000604378 1897 ntBASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AL031731.1-201ENST00000642131 2094 ntBASIC15.95■□□□□ 0.14
VPS13AQ96RL7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VPS13AQ96RL7 AC005052.1-201ENST00000625181 2492 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms