Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LRCH3Q96II8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LRCH3Q96II8 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.69■□□□□ 0.42
LRCH3Q96II8 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC091167.2-201ENST00000579581 588 ntBASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC025048.3-201ENST00000590609 569 ntBASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
LRCH3Q96II8 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 AC099398.1-201ENST00000567919 2776 ntBASIC17.68■□□□□ 0.42
LRCH3Q96II8 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LRCH3Q96II8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 MIR326-201ENST00000362220 95 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AL662890.1-201ENST00000396818 632 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 MTATP6P19-201ENST00000413797 659 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AC005077.2-201ENST00000449786 690 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AP000812.2-201ENST00000538934 718 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AC021097.1-201ENST00000607902 574 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 AP001350.2-201ENST00000625104 1094 ntBASIC17.67■□□□□ 0.42
LRCH3Q96II8 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LRCH3Q96II8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LRCH3Q96II8 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms