Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
BEST3Q8N1M1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AC008677.1-201ENST00000519230 1561 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 MIR346-201ENST00000362234 95 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SPDYE7P-202ENST00000420373 878 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 FAM8A3P-201ENST00000427218 844 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 KLF2P3-201ENST00000451977 1087 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AC125807.1-201ENST00000483097 614 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SPCS2P1-201ENST00000561636 679 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AC051619.7-201ENST00000568314 623 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 LINC02084-201ENST00000606069 1096 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 MIR6080-201ENST00000617359 66 ntBASIC15.28■□□□□ 0.04
BEST3Q8N1M1 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
BEST3Q8N1M1 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AL162727.3-201ENST00000635661 2787 ntBASIC15.27■□□□□ 0.04
BEST3Q8N1M1 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms