Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 AC008741.2-201ENST00000612792 3115 ntBASIC14.6□□□□□ -0.07
SKA3Q8IX90 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PMS2P7-201ENST00000506558 1336 ntBASIC14.6□□□□□ -0.07
SKA3Q8IX90 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.6□□□□□ -0.07
SKA3Q8IX90 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SKA3Q8IX90 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 AC092919.2-201ENST00000623631 1645 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 LINC02199-201ENST00000506655 2702 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 ALOX12P2-203ENST00000570921 1945 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 GGT4P-201ENST00000623672 1708 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 AC140658.5-201ENST00000438532 169 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 AL009183.1-201ENST00000603760 355 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 AC068137.2-201ENST00000605408 478 ntBASIC14.59□□□□□ -0.07
SKA3Q8IX90 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.59□□□□□ -0.07
SKA3Q8IX90 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SKA3Q8IX90 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.58□□□□□ -0.07
SKA3Q8IX90 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SKA3Q8IX90 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SKA3Q8IX90 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SKA3Q8IX90 MIR3909-201ENST00000579518 119 ntBASIC14.58□□□□□ -0.08
SKA3Q8IX90 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms