Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 GPAA1P2-201ENST00000417923 928 ntBASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 SLC25A47P1-201ENST00000531577 414 ntBASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
CCDC88AQ3V6T2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 KRT8P22-201ENST00000562317 1415 ntBASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 AC104596.2-201ENST00000512793 793 ntBASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 AC074044.1-201ENST00000609673 707 ntBASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC88AQ3V6T2 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 MIR663B-201ENST00000408361 115 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AL049840.4-201ENST00000602422 811 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 CU634019.7-201ENST00000624153 1185 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 FP236241.2-201ENST00000624906 1185 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 GGT3P-204ENST00000453783 1664 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 SPDYE17-201ENST00000412399 783 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AL442647.2-201ENST00000429864 857 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AC007551.1-201ENST00000457394 519 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AL021578.1-201ENST00000613646 709 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AL512652.2-201ENST00000625156 1716 ntBASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC88AQ3V6T2 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AC006538.1-201ENST00000567905 1585 ntBASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC88AQ3V6T2 TDH-203ENST00000531764 1110 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms