Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 MIR3909-201ENST00000579518 119 ntBASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AC020765.3-201ENST00000613051 740 ntBASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD3Q3KNS1 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AC254562.1-201ENST00000417586 456 ntBASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CNN2P11-201ENST00000429351 262 ntBASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD3Q3KNS1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.08■□□□□ 0.17
PTCHD3Q3KNS1 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
PTCHD3Q3KNS1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms