Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
CX3CL1P78423 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 AC007326.2-201ENST00000624224 7579 ntBASIC13.31□□□□□ -0.28
CX3CL1P78423 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.31□□□□□ -0.28
CX3CL1P78423 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 HLA-A-202ENST00000376806 1854 ntBASIC13.31□□□□□ -0.28
CX3CL1P78423 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.31□□□□□ -0.28
CX3CL1P78423 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.31□□□□□ -0.28
CX3CL1P78423 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CL1P78423 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.3□□□□□ -0.28
CX3CL1P78423 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CL1P78423 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 HLA-J-202ENST00000469281 1241 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AC096734.2-201ENST00000562054 433 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 AC106730.1-201ENST00000566722 1090 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 MIR4515-201ENST00000584082 81 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AC064836.3-201ENST00000607928 673 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.3□□□□□ -0.28
CX3CL1P78423 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AC079328.2-201ENST00000561241 3354 ntBASIC13.3□□□□□ -0.28
CX3CL1P78423 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CX3CL1P78423 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CL1P78423 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CL1P78423 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 AL671710.1-201ENST00000610245 2349 ntBASIC13.29□□□□□ -0.28
CX3CL1P78423 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.29□□□□□ -0.28
CX3CL1P78423 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CL1P78423 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
CX3CL1P78423 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.29□□□□□ -0.28
CX3CL1P78423 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC13.29□□□□□ -0.28
CX3CL1P78423 AC007967.2-201ENST00000432613 625 ntBASIC13.29□□□□□ -0.28
CX3CL1P78423 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.29□□□□□ -0.28
CX3CL1P78423 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CL1P78423 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms