Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 AC211476.1-201ENST00000503899 468 ntBASIC15.53■□□□□ 0.08
SOX3P41225 YBX1P5-201ENST00000509441 847 ntBASIC15.53■□□□□ 0.08
SOX3P41225 AC091167.2-201ENST00000579581 588 ntBASIC15.53■□□□□ 0.08
SOX3P41225 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
SOX3P41225 AC134684.3-201ENST00000641758 218 ntBASIC15.53■□□□□ 0.08
SOX3P41225 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
SOX3P41225 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 SLC22A20-204ENST00000530038 1673 ntBASIC15.53■□□□□ 0.08
SOX3P41225 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX3P41225 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX3P41225 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
SOX3P41225 AC105917.1-201ENST00000506637 2539 ntBASIC15.52■□□□□ 0.08
SOX3P41225 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX3P41225 CEND1P1-201ENST00000451006 455 ntBASIC15.52■□□□□ 0.08
SOX3P41225 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX3P41225 AP002472.1-201ENST00000577490 586 ntBASIC15.52■□□□□ 0.08
SOX3P41225 ELL2P1-201ENST00000413990 1906 ntBASIC15.52■□□□□ 0.07
SOX3P41225 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.52■□□□□ 0.07
SOX3P41225 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.52■□□□□ 0.07
SOX3P41225 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX3P41225 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.52■□□□□ 0.07
SOX3P41225 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
SOX3P41225 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SOX3P41225 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 HMGA1P7-201ENST00000406908 502 ntBASIC15.51■□□□□ 0.07
SOX3P41225 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 HCG4-201ENST00000418983 998 ntBASIC15.51■□□□□ 0.07
SOX3P41225 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX3P41225 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX3P41225 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
SOX3P41225 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.51■□□□□ 0.07
SOX3P41225 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.51■□□□□ 0.07
SOX3P41225 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 MPDU1-223ENST00000582151 728 ntBASIC15.51■□□□□ 0.07
SOX3P41225 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SOX3P41225 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
SOX3P41225 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.51■□□□□ 0.07
SOX3P41225 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX3P41225 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 TUBB8P12-201ENST00000308911 1335 ntBASIC15.5■□□□□ 0.07
SOX3P41225 TUBB7P-202ENST00000428444 1305 ntBASIC15.5■□□□□ 0.07
SOX3P41225 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 TUBB8P7-204ENST00000567960 1332 ntBASIC15.5■□□□□ 0.07
SOX3P41225 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX3P41225 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX3P41225 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX3P41225 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms