Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 AC006001.1-201ENST00000325130 474 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 HNRNPUP1-201ENST00000554987 333 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.56■□□□□ 0.72
BRCA1P38398 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 MIR4741-201ENST00000579822 90 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 EEF1DP1-201ENST00000585891 896 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
BRCA1P38398 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BRCA1P38398 CROCCP2-202ENST00000412962 2773 ntBASIC19.56■□□□□ 0.72
BRCA1P38398 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.55■□□□□ 0.72
BRCA1P38398 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.55■□□□□ 0.72
BRCA1P38398 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.55■□□□□ 0.72
BRCA1P38398 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.55■□□□□ 0.72
BRCA1P38398 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.55■□□□□ 0.72
BRCA1P38398 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
BRCA1P38398 MPRIPP1-201ENST00000452433 1089 ntBASIC19.55■□□□□ 0.72
BRCA1P38398 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.55■□□□□ 0.72
BRCA1P38398 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.55■□□□□ 0.72
BRCA1P38398 MIR5572-201ENST00000583188 137 ntBASIC19.55■□□□□ 0.72
BRCA1P38398 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.55■□□□□ 0.72
BRCA1P38398 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRCA1P38398 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
BRCA1P38398 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.54■□□□□ 0.72
BRCA1P38398 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.54■□□□□ 0.72
BRCA1P38398 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
BRCA1P38398 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
BRCA1P38398 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRCA1P38398 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
BRCA1P38398 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BRCA1P38398 HOMER2P2-201ENST00000451621 847 ntBASIC19.54■□□□□ 0.72
BRCA1P38398 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
BRCA1P38398 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.54■□□□□ 0.72
BRCA1P38398 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.53■□□□□ 0.72
BRCA1P38398 AC092978.1-202ENST00000637590 1327 ntBASIC19.53■□□□□ 0.72
BRCA1P38398 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRCA1P38398 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms