Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.14■□□□□ 0.17
SHMT2P34897 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHMT2P34897 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHMT2P34897 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 WASH6P-202ENST00000359512 1437 ntBASIC16.13■□□□□ 0.17
SHMT2P34897 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 AL513523.2-202ENST00000427283 2040 ntBASIC16.13■□□□□ 0.17
SHMT2P34897 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 ADH5P3-201ENST00000433842 1137 ntBASIC16.13■□□□□ 0.17
SHMT2P34897 AP006288.1-201ENST00000446065 395 ntBASIC16.13■□□□□ 0.17
SHMT2P34897 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.13■□□□□ 0.17
SHMT2P34897 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 AC055717.3-201ENST00000622967 595 ntBASIC16.13■□□□□ 0.17
SHMT2P34897 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.13■□□□□ 0.17
SHMT2P34897 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHMT2P34897 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.13■□□□□ 0.17
SHMT2P34897 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHMT2P34897 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.12■□□□□ 0.17
SHMT2P34897 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHMT2P34897 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SHMT2P34897 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.12■□□□□ 0.17
SHMT2P34897 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.12■□□□□ 0.17
SHMT2P34897 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 AC026120.1-201ENST00000611536 926 ntBASIC16.12■□□□□ 0.17
SHMT2P34897 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SHMT2P34897 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 AC006538.1-201ENST00000567905 1585 ntBASIC16.12■□□□□ 0.17
SHMT2P34897 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHMT2P34897 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
SHMT2P34897 MST1L-201ENST00000442552 2185 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SHMT2P34897 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms