Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL8A1P27658 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 USP32P1-208ENST00000506594 1164 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 AC091167.2-201ENST00000579581 588 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.32□□□□□ -0.12
COL8A1P27658 MIR8072-201ENST00000614241 80 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 TOP3BP1-201ENST00000420768 1380 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL8A1P27658 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL8A1P27658 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL8A1P27658 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 MIR1247-201ENST00000408206 136 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.31□□□□□ -0.12
COL8A1P27658 MEP1AP4-201ENST00000423244 1087 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.31□□□□□ -0.12
COL8A1P27658 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 CSF2RBP1-201ENST00000447905 391 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 AC007551.1-201ENST00000457394 519 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 ZNF767P-206ENST00000513792 565 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.31□□□□□ -0.12
COL8A1P27658 FOS-206ENST00000555347 1280 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 AC021097.1-201ENST00000607902 574 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
COL8A1P27658 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
COL8A1P27658 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 CLK3P2-201ENST00000427566 1453 ntBASIC14.31□□□□□ -0.12
COL8A1P27658 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.31□□□□□ -0.12
COL8A1P27658 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
COL8A1P27658 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms