Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ECEL1P3-201ENST00000427961 737 ntBASIC12.8□□□□□ -0.36
CXCL1P09341 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 CD81-212ENST00000526072 1172 ntTSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 AC004263.2-201ENST00000617183 678 ntBASIC12.8□□□□□ -0.36
CXCL1P09341 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CXCL1P09341 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.8□□□□□ -0.36
CXCL1P09341 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CXCL1P09341 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC12.8□□□□□ -0.36
CXCL1P09341 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CXCL1P09341 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 ENSA-206ENST00000361631 725 ntTSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.79□□□□□ -0.36
CXCL1P09341 AC098590.1-201ENST00000468126 897 ntBASIC12.79□□□□□ -0.36
CXCL1P09341 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 IGHV3-52-201ENST00000519770 353 ntBASIC12.79□□□□□ -0.36
CXCL1P09341 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 AL136038.4-201ENST00000603606 1261 ntBASIC12.79□□□□□ -0.36
CXCL1P09341 SNX21-213ENST00000614929 587 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC12.79□□□□□ -0.36
CXCL1P09341 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
CXCL1P09341 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 AC006504.5-208ENST00000588784 2401 ntBASIC12.79□□□□□ -0.36
CXCL1P09341 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms