Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
COL3A1P02461 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.42■■□□□ 1.02
COL3A1P02461 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.42■■□□□ 1.02
COL3A1P02461 AC092337.1-201ENST00000568699 1129 ntBASIC21.42■■□□□ 1.02
COL3A1P02461 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC21.42■■□□□ 1.02
COL3A1P02461 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 Z97205.2-201ENST00000564697 1639 ntBASIC21.42■■□□□ 1.02
COL3A1P02461 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 GCK-209ENST00000616242 2260 ntTSL 5 BASIC21.42■■□□□ 1.02
COL3A1P02461 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
COL3A1P02461 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC21.42■■□□□ 1.02
COL3A1P02461 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL3A1P02461 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL3A1P02461 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 SP100-205ENST00000409824 1802 ntTSL 5 BASIC21.41■■□□□ 1.02
COL3A1P02461 CYP2T1P-202ENST00000641596 2535 ntBASIC21.41■■□□□ 1.02
COL3A1P02461 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COL3A1P02461 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.41■■□□□ 1.02
COL3A1P02461 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.41■■□□□ 1.02
COL3A1P02461 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC21.41■■□□□ 1.02
COL3A1P02461 CRB3P1-201ENST00000449338 276 ntBASIC21.41■■□□□ 1.02
COL3A1P02461 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC21.41■■□□□ 1.02
COL3A1P02461 AC138761.1-201ENST00000584393 385 ntBASIC21.41■■□□□ 1.02
COL3A1P02461 5S_rRNA.22-201ENST00000614916 106 ntBASIC21.41■■□□□ 1.02
COL3A1P02461 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.41■■□□□ 1.02
COL3A1P02461 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 AC069224.1-201ENST00000566372 1715 ntBASIC21.41■■□□□ 1.02
COL3A1P02461 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
COL3A1P02461 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC21.41■■□□□ 1.02
COL3A1P02461 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL3A1P02461 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC21.41■■□□□ 1.02
COL3A1P02461 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 FRMD6-AS1-201ENST00000617151 2229 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
COL3A1P02461 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC21.4■■□□□ 1.02
COL3A1P02461 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC21.4■■□□□ 1.02
COL3A1P02461 WASH4P-201ENST00000564273 1246 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 SPDYE22P-201ENST00000582158 798 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC21.4■■□□□ 1.02
COL3A1P02461 TEX48-202ENST00000612244 662 ntTSL 3 BASIC21.4■■□□□ 1.02
COL3A1P02461 AC009118.2-201ENST00000613275 655 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 AL662844.4-201ENST00000606367 2838 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COL3A1P02461 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.4■■□□□ 1.02
COL3A1P02461 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
COL3A1P02461 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.4■■□□□ 1.02
COL3A1P02461 AL596087.1-201ENST00000400979 1969 ntBASIC21.4■■□□□ 1.02
COL3A1P02461 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL3A1P02461 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.39■■□□□ 1.02
COL3A1P02461 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.39■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms