Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
LDB3O75112 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 RN7SL589P-201ENST00000481268 310 ntBASIC15.48■□□□□ 0.07
LDB3O75112 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
LDB3O75112 AC079140.1-201ENST00000508039 487 ntBASIC15.48■□□□□ 0.07
LDB3O75112 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.48■□□□□ 0.07
LDB3O75112 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.48■□□□□ 0.07
LDB3O75112 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.48■□□□□ 0.07
LDB3O75112 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LDB3O75112 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.48■□□□□ 0.07
LDB3O75112 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
LDB3O75112 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.47■□□□□ 0.07
LDB3O75112 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 AC006449.5-201ENST00000610658 2098 ntBASIC15.47■□□□□ 0.07
LDB3O75112 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.47■□□□□ 0.07
LDB3O75112 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.47■□□□□ 0.07
LDB3O75112 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.47■□□□□ 0.07
LDB3O75112 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.47■□□□□ 0.07
LDB3O75112 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.47■□□□□ 0.07
LDB3O75112 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.47■□□□□ 0.07
LDB3O75112 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.47■□□□□ 0.07
LDB3O75112 AC105339.1-204ENST00000636249 355 ntBASIC15.47■□□□□ 0.07
LDB3O75112 AC134684.3-201ENST00000641758 218 ntBASIC15.47■□□□□ 0.07
LDB3O75112 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.47■□□□□ 0.07
LDB3O75112 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
LDB3O75112 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
LDB3O75112 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LDB3O75112 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
LDB3O75112 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.46■□□□□ 0.07
LDB3O75112 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LDB3O75112 RPS8P6-201ENST00000426177 609 ntBASIC15.46■□□□□ 0.07
LDB3O75112 SPCS2P4-201ENST00000436160 681 ntBASIC15.46■□□□□ 0.07
LDB3O75112 PRYP6-201ENST00000514804 343 ntBASIC15.46■□□□□ 0.07
LDB3O75112 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.46■□□□□ 0.07
LDB3O75112 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.46■□□□□ 0.07
LDB3O75112 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.46■□□□□ 0.07
LDB3O75112 AC027307.2-201ENST00000591252 911 ntBASIC15.46■□□□□ 0.07
LDB3O75112 AC022145.2-201ENST00000598203 171 ntBASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms