Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP1AQ9HD42 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 AC096887.2-201ENST00000623443 1957 ntBASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP1AQ9HD42 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 AL139125.2-201ENST00000623134 1869 ntBASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CHMP1AQ9HD42 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 AC012676.1-201ENST00000574705 1949 ntBASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 AC022211.4-201ENST00000625094 2161 ntBASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.2■□□□□ 0.82
CHMP1AQ9HD42 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHMP1AQ9HD42 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 CR559946.2-201ENST00000623684 991 ntBASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CHMP1AQ9HD42 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
CHMP1AQ9HD42 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.16■□□□□ 0.82
CHMP1AQ9HD42 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.16■□□□□ 0.82
CHMP1AQ9HD42 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.16■□□□□ 0.82
CHMP1AQ9HD42 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP1AQ9HD42 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CHMP1AQ9HD42 AC138932.3-201ENST00000567634 1902 ntBASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHMP1AQ9HD42 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CHMP1AQ9HD42 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.14■□□□□ 0.81
CHMP1AQ9HD42 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP1AQ9HD42 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP1AQ9HD42 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms