Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC022413.1-201ENST00000624602 984 ntBASIC21.89■■□□□ 1.09
DEPDC4Q8N2C3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DEPDC4Q8N2C3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DEPDC4Q8N2C3 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DEPDC4Q8N2C3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 AC012676.1-201ENST00000574705 1949 ntBASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
DEPDC4Q8N2C3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
DEPDC4Q8N2C3 LINC01124-201ENST00000409786 2117 ntBASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.86■■□□□ 1.09
DEPDC4Q8N2C3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 AC126177.7-201ENST00000547904 679 ntBASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
DEPDC4Q8N2C3 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DEPDC4Q8N2C3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
DEPDC4Q8N2C3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DEPDC4Q8N2C3 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
DEPDC4Q8N2C3 MIR219A2-201ENST00000608502 1504 ntBASIC21.84■■□□□ 1.09
DEPDC4Q8N2C3 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DEPDC4Q8N2C3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DEPDC4Q8N2C3 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.83■■□□□ 1.09
DEPDC4Q8N2C3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.83■■□□□ 1.08
DEPDC4Q8N2C3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
DEPDC4Q8N2C3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 RNF126P1-201ENST00000567452 1320 ntBASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
DEPDC4Q8N2C3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DEPDC4Q8N2C3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 AC133561.1-201ENST00000568600 2415 ntBASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DEPDC4Q8N2C3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 RARRES2P2-201ENST00000394842 485 ntBASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DEPDC4Q8N2C3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
DEPDC4Q8N2C3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 AC097639.1-201ENST00000565519 1891 ntBASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
DEPDC4Q8N2C3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms