Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 AC190387.1-201ENST00000551683 408 ntBASIC18.47■□□□□ 0.55
COL20A1Q9P218 AC044860.1-202ENST00000559481 777 ntBASIC18.47■□□□□ 0.55
COL20A1Q9P218 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 AC009118.2-201ENST00000613275 655 ntBASIC18.47■□□□□ 0.55
COL20A1Q9P218 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL20A1Q9P218 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL20A1Q9P218 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 CRB3P1-201ENST00000449338 276 ntBASIC18.46■□□□□ 0.55
COL20A1Q9P218 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 SPDYE18-201ENST00000510091 1050 ntBASIC18.46■□□□□ 0.55
COL20A1Q9P218 ZNF890P-202ENST00000530367 1156 ntBASIC18.46■□□□□ 0.55
COL20A1Q9P218 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 PCDHA12-202ENST00000613593 2588 ntBASIC18.46■□□□□ 0.55
COL20A1Q9P218 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL20A1Q9P218 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL20A1Q9P218 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.46■□□□□ 0.54
COL20A1Q9P218 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.46■□□□□ 0.54
COL20A1Q9P218 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.46■□□□□ 0.54
COL20A1Q9P218 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.46■□□□□ 0.54
COL20A1Q9P218 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.46■□□□□ 0.54
COL20A1Q9P218 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AL592424.1-201ENST00000563624 1536 ntBASIC18.45■□□□□ 0.54
COL20A1Q9P218 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 POU5F1P6-201ENST00000466990 990 ntBASIC18.45■□□□□ 0.54
COL20A1Q9P218 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AP005018.1-201ENST00000525475 301 ntBASIC18.45■□□□□ 0.54
COL20A1Q9P218 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL20A1Q9P218 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.45■□□□□ 0.54
COL20A1Q9P218 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL20A1Q9P218 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL20A1Q9P218 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL20A1Q9P218 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL20A1Q9P218 REXO1L8P-201ENST00000604378 1897 ntBASIC18.44■□□□□ 0.54
COL20A1Q9P218 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL20A1Q9P218 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms