Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 BX842568.4-201ENST00000421222 227 ntBASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SMC4Q9NTJ3 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 TFAMP1-201ENST00000412727 736 ntBASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AL138918.1-201ENST00000568306 659 ntBASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AC010327.4-202ENST00000591484 748 ntBASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SMC4Q9NTJ3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 AKAP8P1-201ENST00000434743 1349 ntBASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 FRMD6-AS1-201ENST00000617151 2229 ntBASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 MKNK2P1-201ENST00000437526 628 ntBASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 DNAJB3-201ENST00000446806 729 ntBASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 PRYP6-201ENST00000514804 343 ntBASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.08■□□□□ 0.97
SMC4Q9NTJ3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 AL596087.1-201ENST00000400979 1969 ntBASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
SMC4Q9NTJ3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 AL391005.1-201ENST00000623953 2435 ntBASIC21.07■□□□□ 0.96
SMC4Q9NTJ3 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms