Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.81■□□□□ 0.6
SH3RF1Q7Z6J0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 GGT4P-201ENST00000623672 1708 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 AC090340.1-201ENST00000620778 4980 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 HMGA1P7-201ENST00000406908 502 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 COX5BP8-201ENST00000416911 349 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 AC004890.2-204ENST00000481968 304 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 MIR4515-201ENST00000584082 81 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 AL358472.5-202ENST00000641448 1267 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 MTHFR-217ENST00000641820 1569 ntBASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SH3RF1Q7Z6J0 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 RN7SL692P-201ENST00000464677 288 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AC027307.3-201ENST00000594262 1100 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AC084121.4-201ENST00000641598 221 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AF228730.8-201ENST00000642140 221 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AC131009.4-201ENST00000624048 1740 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 AL513523.2-202ENST00000427283 2040 ntBASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SH3RF1Q7Z6J0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 AL031731.1-201ENST00000642131 2094 ntBASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.78■□□□□ 0.6
SH3RF1Q7Z6J0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms