Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LINC02012-201ENST00000608206 1725 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 AC093525.9-201ENST00000624961 1746 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 KRT18P22-201ENST00000402024 1347 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
CKS1BP61024 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC11.63□□□□□ -0.55
CKS1BP61024 LIN28AP1-201ENST00000429574 405 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 RASA4DP-201ENST00000460726 1199 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 AC002558.1-201ENST00000488906 803 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 ZNF444P1-201ENST00000559497 298 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 TEN1-204ENST00000588202 862 ntTSL 3 BASIC11.63□□□□□ -0.55
CKS1BP61024 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
CKS1BP61024 AC141257.4-201ENST00000634557 245 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 AC136944.6-201ENST00000634818 245 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CKS1BP61024 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 AMT-233ENST00000636522 1620 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 LINC01568-207ENST00000641790 1380 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC11.63□□□□□ -0.55
CKS1BP61024 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 REXO1L2P-201ENST00000425429 2069 ntBASIC11.63□□□□□ -0.55
CKS1BP61024 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CKS1BP61024 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CKS1BP61024 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.62□□□□□ -0.55
CKS1BP61024 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CKS1BP61024 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ADM-208ENST00000534464 1640 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CKS1BP61024 ATP5G1P1-201ENST00000448724 379 ntBASIC11.62□□□□□ -0.55
CKS1BP61024 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC11.62□□□□□ -0.55
CKS1BP61024 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms